miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125462128|gb|EL473821.1|EL473821 CGGGGGGGGCCAGGTGTGCTGATACGGCCTTGCAGGGAGTAACCTAAACTTTTCCCTCTTTCTTCTTCTTCTTCTTCTTC
TTCTTGCAGTTTCACCACTTCTCCCTTTTCATTCGACTTCAGCCTCAGCTTCTCGAATCCTTACGGTATGGCTGAAGCGG
AATCAAAGCCTCTTGATTACGTATCAGAGATAGTTCTGAAGAAACGGAAAAACAACGAGGACTGGGCAATTAGAAGAAAA
GAGCAGTTGGAACAACGGGTCAAGAGGTCAAAAAGTGATCATTTTGTTATAAAGAAGCCCGAACAGCTTATCAGAGAATA
CCGCGATAGGGAGTCTGATCTTATCAAAATGAAATATCGGGCAAAACAACCGATTAAAACATCTGATTTGTCCCGATCGA
AGCTCCTTTTCATCATGCGTATTCAAGGTAAAAGCGACATGCATCCTCAGACAAGGAAACTTTTGTACGCTCTGAGACTG
AGGCGAATGTTCACCGGTGTTTTTGTTAAAGCAAACAACAGAATATTAGATATCTTACAAAAAGTTGAACCGTATGTGAC
TTACGGGTATCCGAATCTCAAGAGTGTAAACGAGCTGATATACAAGAAGGGGCTGGCAAAAATTAACAAGCAGATATACC
CTTTGACAGATAATAACATCATTGAACAGGCAGTTGGTGAGCACAAGATTATATGCGTTGAAGATATCGTAAACGAGATT
GCAAATGTAGGCCCACATTTCAAGGAAGTTAGCAACGTTTTGTGTCCTTTTACTCTGAACAAGCCTGAGAAGGCGCTGCA
GGGTAAGAAAAAACCGTTCAGGGATGGGGGTGATTCTGGGGACCGTGAAGA




Most similar to sp|Q9SAI5|RL71_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SAI5|RL71_ARATH 60S ribosomal protein L7-1 OS=Arabidopsis
           thaliana GN=RPL7A PE=2 SV=1
          Length = 247

 Score =  247 bits (630), Expect = 9e-65
 Identities = 131/239 (54%), Positives = 170/239 (71%), Gaps = 5/239 (2%)
 Frame = +1

Query: 148 MAEAESKPLDYVSEIVLKKRKNNEDWAIRRKEQLEQ----RVKRSKSDHFVIKKPEQLIR 315
           MAE E+K LDY+ EIVLKKRKN ++ A  RK+QLE     + K+  SD   IK+PE  + 
Sbjct: 1   MAEEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSD---IKRPEDFVH 57

Query: 316 EYRDRESDLIKMKYRAKQPIKTSDLSRSKLLFIMRIQGKSDMHPQTRKLLYALRLRRMFT 495
           E+R +E D+I+MK R K+P  +    +S L+FI+RIQGK+DMHP+T+++L  L+L+ +FT
Sbjct: 58  EFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFT 117

Query: 496 GVFVKANNRILDILQKVEPYVTYGYPNLKSVNELIYKKGLAKINKQIYPLTDNNIIEQAV 675
           GVF KA + +   L KV+PYVTYGYPN KSV +LIYKKG   I     PLTDNNIIEQA+
Sbjct: 118 GVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQAL 177

Query: 676 GEHKIICVEDIVNEIANVGPHFKEVSNVLCPFTLNKP-EKALQGKKKPFRDGGDSGDRE 849
           GEHKI+ +ED+VNEIA VG HF+EV   L P  LNKP    L  KK+ F +GGD+G+RE
Sbjct: 178 GEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNRE 236